Package: INTRIGUE 0.1.0
INTRIGUE: Quantify and Control Reproducibility in High-Throughput Experiments
Estimate the proportions of the null and the reproducibility and non-reproducibility of the signal group for the input data set. The Bayes factor calculation and EM (Expectation Maximization) algorithm procedures are also included.
Authors:
INTRIGUE_0.1.0.tar.gz
INTRIGUE_0.1.0.zip(r-4.5)INTRIGUE_0.1.0.zip(r-4.4)INTRIGUE_0.1.0.zip(r-4.3)
INTRIGUE_0.1.0.tgz(r-4.4-any)INTRIGUE_0.1.0.tgz(r-4.3-any)
INTRIGUE_0.1.0.tar.gz(r-4.5-noble)INTRIGUE_0.1.0.tar.gz(r-4.4-noble)
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INTRIGUE.pdf |INTRIGUE.html✨
INTRIGUE/json (API)
| # Install 'INTRIGUE' in R: |
| install.packages('INTRIGUE', repos = c('https://mkleinsa.r-universe.dev', 'https://cloud.r-project.org')) |
- heterodata - Simulation Dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:6227a8aed5. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win | NOTE | Sep 08 2024 |
| R-4.5-linux | NOTE | Sep 08 2024 |
| R-4.4-win | NOTE | Sep 08 2024 |
| R-4.4-mac | NOTE | Sep 08 2024 |
| R-4.3-win | NOTE | Sep 08 2024 |
| R-4.3-mac | NOTE | Sep 08 2024 |
Exports:bf.cal.metahetero
Dependencies:clidata.tabledplyrfansigenericsgluejsonlitelifecyclemagrittrpillarpkgconfigR6rlangrlistSQUAREMtibbletidyselectutf8vctrswithrXMLyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bayes Factor Approximation | bf.approx |
| Bayes Factor Calculation Scheme for CENF prior | bf.cal.cefn |
| Bayes Factor Calculation Scheme for META prior | bf.cal.meta |
| Bayes Factor EM Updating Scheme | bf.em |
| Bayes Factor Loglikelihood Function | bf.loglik |
| Bayes Factor Weighted Summation | bf.weighted_sum |
| Heterogeneity Evaluation | hetero |
| Local False Discovery Rate Evaluation | hetero.lfdr |
| Simulation Dataset | heterodata |
