Package: INTRIGUE 0.1.0
INTRIGUE: Quantify and Control Reproducibility in High-Throughput Experiments
Estimate the proportions of the null and the reproducibility and non-reproducibility of the signal group for the input data set. The Bayes factor calculation and EM (Expectation Maximization) algorithm procedures are also included.
Authors:
INTRIGUE_0.1.0.tar.gz
INTRIGUE_0.1.0.zip(r-4.7)INTRIGUE_0.1.0.zip(r-4.6)INTRIGUE_0.1.0.zip(r-4.5)
INTRIGUE_0.1.0.tgz(r-4.6-any)INTRIGUE_0.1.0.tgz(r-4.5-any)
INTRIGUE_0.1.0.tar.gz(r-4.7-any)INTRIGUE_0.1.0.tar.gz(r-4.6-any)
INTRIGUE_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
INTRIGUE/json (API)
| # Install 'INTRIGUE' in R: |
| install.packages('INTRIGUE', repos = c('https://mkleinsa.r-universe.dev', 'https://cloud.r-project.org')) |
- heterodata - Simulation Dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:6227a8aed5. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 205 | ||
| source / vignettes | OK | 148 | ||
| linux-release-x86_64 | NOTE | 112 | ||
| macos-release-arm64 | NOTE | 83 | ||
| macos-oldrel-arm64 | NOTE | 75 | ||
| windows-devel | NOTE | 66 | ||
| windows-release | NOTE | 63 | ||
| windows-oldrel | NOTE | 68 | ||
| wasm-release | OK | 137 |
Exports:bf.cal.metahetero
Dependencies:clidata.tabledplyrgenericsgluejsonlitelifecyclemagrittrpillarpkgconfigR6rlangrlistSQUAREMtibbletidyselectutf8vctrswithrXMLyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bayes Factor Approximation | bf.approx |
| Bayes Factor Calculation Scheme for CENF prior | bf.cal.cefn |
| Bayes Factor Calculation Scheme for META prior | bf.cal.meta |
| Bayes Factor EM Updating Scheme | bf.em |
| Bayes Factor Loglikelihood Function | bf.loglik |
| Bayes Factor Weighted Summation | bf.weighted_sum |
| Heterogeneity Evaluation | hetero |
| Local False Discovery Rate Evaluation | hetero.lfdr |
| Simulation Dataset | heterodata |
